Tools
- DrawRINGS: 2D Java-based glycan structure drawing tool for generating KCF format and/or querying the RINGS database, which current contains the glycan structures from Glycome-DB and an internally curated data set from the literature.
- Glycan Miner Tool: implemented based on Hashimoto et al., 2008 for mining alpha-closed frequent subtrees from a set of glycan structures
- Glycan Pathway Predictor (GPP) Tool: implemented based on Krambeck et al., 2005, which was later improved in Krambeck et al., 2009, for dynamically computing the N-glycan biosynthesis pathway from a given glycan structure
- GlycomeAtlas: Visualization of glycome profiling data on human and mouse tissue samples, as described in Konishi et al., 2012.
- Glycan Kernel Tool: Glycan structure classification tool, based on Jiang et al., 2011, for finding distinguishing glycan substructures in a target data set compared to a control.
- MCAW Tool: glycan structure multiple alignment tool. Align a set of glycan structures and visualize the result as a glycan profile. This tool can be used to find commonalities among a group of glycan structures.
- Profile PSTMM Tool : implemented based on Aoki-Kinoshita et al., 2006, generate glycan profiles from glycan structure data which can be entered together with binding affinity data, for example, for a particular biological sample
Documentation
- Help: brief users manual for the tools and utilities provided
- What's new?: latest updates
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Utilities
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